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  5. Als_g36476

Als_g36476 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g36476
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00160130 NFD03, HMGB3,... HMG1/2-like protein OS=Glycine max 0.02 OrthoFinder output from all 47 species
AT1G20696 NFD03, HMGB3, NFD3 high mobility group B3 0.02 OrthoFinder output from all 47 species
AT3G51880 NFD1, HMGB1 high mobility group B1 0.02 OrthoFinder output from all 47 species
Als_g44161 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57132.t1 Aspi01Gene57132 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004800.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.29 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g18887 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g21071 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01032840001 NFD1, HMGB1 High mobility group B protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_23297 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g21733 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Lfl_g24838 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04305 NFD1, HMGB1 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g11840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12771 NFD2, HMG BETA... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012915 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Tin_g39912 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 48 116
No external refs found!