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  5. Als_g42380

Als_g42380 (RAB1C, ATRAB1C, ATRABD2C)


Aliases : RAB1C, ATRAB1C, ATRABD2C

Description : D-class RAB GTPase & original description: none


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g42380
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT3G11730 ATFP8, RABD1, ATRABD1 Ras-related small GTP-binding family protein 0.02 OrthoFinder output from all 47 species
Cba_g55676 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G089700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.39G002700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.10 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Ehy_g11117 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_01493 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Lfl_g29131 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Msp_g29525 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17943 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g090170.4.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 1 160
No external refs found!