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  5. Als_g46335

Als_g46335


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g46335

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.01 OrthoFinder output from all 47 species
AT1G31340 RUB1, ATRUB1, NEDD8 related to ubiquitin 1 0.01 OrthoFinder output from all 47 species
AT2G35635 UBQ7, RUB2 ubiquitin 7 0.05 OrthoFinder output from all 47 species
Adi_g071501 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g125802 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aev_g05687 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12291 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g63748 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20739.t1 UBQ11, Aspi01Gene20739 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27260.t1 UBQ10, Aspi01Gene27260 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32401 UBQ6 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.31G025200.1 UBQ14, Ceric.31G025200 UBQ ubiquitin-fold protein & original description:... 0.08 OrthoFinder output from all 47 species
Dcu_g07346 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25908 UBQ5 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Gb_28672 RUB1, ATRUB1, NEDD8 ubiquitin-fold protein (RUB) 0.07 OrthoFinder output from all 47 species
LOC_Os04g53620.1 UBQ4, LOC_Os04g53620 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Len_g40842 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g41265 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g16683 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g17565 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g23474 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g23519 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g07973 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g21095 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g22530 UBQ6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42667 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g005610.4.1 Solyc03g005610 Polyubiquitin (Fragment) OS=Acetabularia peniculus... 0.02 OrthoFinder output from all 47 species
Spa_g12172 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29602 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g33680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35067 UBQ14 UBQ ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034164_P001 RUB1, ATRUB1,... ubiquitin-fold protein (RUB) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008073 ornithine decarboxylase inhibitor activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0042979 ornithine decarboxylase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 121
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!