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  5. Pnu_g15319

Pnu_g15319 (CRR2)


Aliases : CRR2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g15319
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Adi_g002040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024727 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42177 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06035 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57232.t1 Aspi01Gene57232 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0101.g044355 No alias not classified & original description: CDS=1-2031 0.03 OrthoFinder output from all 47 species
Azfi_s0601.g078901 No alias not classified & original description: CDS=1-2334 0.02 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05330 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07289 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g18562 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20876 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30008 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G022300.1 Ceric.10G022300 not classified & original description: pacid=50612428... 0.02 OrthoFinder output from all 47 species
Ceric.15G074900.1 Ceric.15G074900 not classified & original description: pacid=50640124... 0.03 OrthoFinder output from all 47 species
Ceric.36G028800.1 Ceric.36G028800 not classified & original description: pacid=50568963... 0.04 OrthoFinder output from all 47 species
Dac_g03359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38585 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04388 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01033654001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Len_g09420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54328 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g58985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_668740g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g21065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22512 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36262 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g47300 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63512 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03104 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05927 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018468 No alias solute transporter *(MTCC) & original description: CDS=2675-4273 0.02 OrthoFinder output from all 47 species
Sam_g11266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g014360.3.1 LOI1, MEF11,... RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40438 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 217 246
IPR032867 DYW_dom 565 657
IPR002885 Pentatricopeptide_repeat 60 86
IPR002885 Pentatricopeptide_repeat 424 448
IPR046848 E_motif 467 529
IPR002885 Pentatricopeptide_repeat 116 163
IPR002885 Pentatricopeptide_repeat 248 296
IPR002885 Pentatricopeptide_repeat 349 397
No external refs found!