1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g50168

Als_g50168


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50168

Target Alias Description ECC score Gene Family Method Actions
AT1G58470 RBP1, ATRBP1 RNA-binding protein 1 0.02 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT4G14300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g015980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12817 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41903.t1 Aspi01Gene41903 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0195.g057243 No alias not classified & original description: CDS=263-1516 0.03 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.03 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.03 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.06 OrthoFinder output from all 47 species
Ceric.30G049700.1 Ceric.30G049700 not classified & original description: pacid=50608801... 0.03 OrthoFinder output from all 47 species
Dac_g11734 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g02420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014264 No alias not classified & original description: CDS=1-1203 0.04 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 97 164
IPR000504 RRM_dom 187 256
No external refs found!