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  5. Als_g50439

Als_g50439 (VLN4, ATVLN4)


Aliases : VLN4, ATVLN4

Description : villin actin-crosslinking factor & original description: none


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50439
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Aev_g02570 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38086 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02316 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05233 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g07178 ATVLN3, VLN3 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39503 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g51440.1 VLN4, ATVLN4,... villin actin-crosslinking factor 0.02 OrthoFinder output from all 47 species
LOC_Os05g06110.1 VLN1, ATVLN1,... villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
MA_10430359g0040 ATVLN3, VLN3 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Msp_g14171 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31948 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10560 No alias villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47063 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55666 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031068_P001 VLN1, ATVLN1,... villin actin-crosslinking factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
BP GO:0007010 cytoskeleton organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 619 661
IPR007123 Gelsolin-like_dom 149 205
IPR007123 Gelsolin-like_dom 408 482
IPR007123 Gelsolin-like_dom 263 337
IPR007123 Gelsolin-like_dom 39 112
IPR003128 Villin_headpiece 964 999
No external refs found!