Pnu_g15729


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g15729
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00127120 CRR22,... Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00158010 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g004398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034865 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053729 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087163 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g094457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g13276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g12627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g45822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06038 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04252 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16322 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16831 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18707 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23475 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30802 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g67885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29888.t1 Aspi01Gene29888 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.01 OrthoFinder output from all 47 species
Azfi_s0045.g030112 No alias not classified & original description: CDS=94-318 0.01 OrthoFinder output from all 47 species
Azfi_s0073.g037188 CRR22 not classified & original description: CDS=1-1875 0.01 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.03 OrthoFinder output from all 47 species
Azfi_s0115.g046284 No alias not classified & original description: CDS=76-2679 0.03 OrthoFinder output from all 47 species
Azfi_s0116.g046409 No alias not classified & original description: CDS=1-603 0.03 OrthoFinder output from all 47 species
Cba_g05970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G040700.1 Ceric.20G040700 not classified & original description: pacid=50566494... 0.02 OrthoFinder output from all 47 species
Ceric.22G077500.1 Ceric.22G077500 not classified & original description: pacid=50615168... 0.02 OrthoFinder output from all 47 species
Ceric.23G030200.1 Ceric.23G030200 not classified & original description: pacid=50609682... 0.03 OrthoFinder output from all 47 species
Ceric.29G017400.1 Ceric.29G017400 not classified & original description: pacid=50625928... 0.02 OrthoFinder output from all 47 species
Ceric.30G071500.1 Ceric.30G071500 not classified & original description: pacid=50609206... 0.02 OrthoFinder output from all 47 species
Ceric.31G032400.1 CRR22, Ceric.31G032400 not classified & original description: pacid=50574168... 0.03 OrthoFinder output from all 47 species
Dac_g03777 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g16787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15555 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15898 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g17992 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18289 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36740 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25262 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g19838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44934 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27843 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20201 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64858 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20888 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g04638 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46357 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56225 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61267 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007679 OTP86 not classified & original description: CDS=1-4497 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010154 No alias not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018668 No alias ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g11237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13567 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo106861 OTP82 Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo444974 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.02 OrthoFinder output from all 47 species
Smo84746 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.02 OrthoFinder output from all 47 species
Spa_g06501 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12946 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05116 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06120 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g11871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13288 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26745 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g44081 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.02 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0008150 biological_process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 579 627
IPR002885 Pentatricopeptide_repeat 276 324
IPR002885 Pentatricopeptide_repeat 479 524
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 680 728
IPR032867 DYW_dom 896 988
IPR046848 E_motif 798 860
IPR002885 Pentatricopeptide_repeat 756 779
No external refs found!