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  5. Als_g54319

Als_g54319


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g54319
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015823 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016795 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117068 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34817 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05430 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10029 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15655 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05294 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36683 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18136 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10220.t1 OTP84, Aspi01Gene10220 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10387.t1 REME1, Aspi01Gene10387 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39631.t1 CRR2, Aspi01Gene39631 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001245 OTP82 not classified & original description: CDS=1-1971 0.05 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030697 No alias not classified & original description: CDS=1-2361 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038564 EMB2758 not classified & original description: CDS=1-2661 0.04 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27524 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67421 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G018600.1 Ceric.01G018600 not classified & original description: pacid=50592052... 0.03 OrthoFinder output from all 47 species
Ceric.10G046000.1 CRR22, Ceric.10G046000 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G085300.1 Ceric.11G085300 not classified & original description: pacid=50596385... 0.03 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.03 OrthoFinder output from all 47 species
Ceric.20G040800.1 OTP86, Ceric.20G040800 not classified & original description: pacid=50566943... 0.03 OrthoFinder output from all 47 species
Ceric.25G036300.1 Ceric.25G036300 not classified & original description: pacid=50594016... 0.04 OrthoFinder output from all 47 species
Ceric.31G026600.1 CRR22, Ceric.31G026600 not classified & original description: pacid=50574263... 0.03 OrthoFinder output from all 47 species
Dac_g05525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g22451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43181 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02940 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21844 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15835 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
LOC_Os03g56850.1 LOC_Os03g56850 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.04 OrthoFinder output from all 47 species
Len_g17754 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18318 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18557 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g50872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06713 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11764 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g34768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03998 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09876 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g20007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32911 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02840 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60210 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18869 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54829 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55034 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g05074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo173139 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc08g076150.4.1 Solyc08g076150 Pentatricopeptide repeat-containing protein At1g31920... 0.04 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
Spa_g23799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11066 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30232 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 860 906
IPR002885 Pentatricopeptide_repeat 759 805
IPR002885 Pentatricopeptide_repeat 658 704
IPR002885 Pentatricopeptide_repeat 456 502
IPR002885 Pentatricopeptide_repeat 557 603
IPR002885 Pentatricopeptide_repeat 355 401
IPR002885 Pentatricopeptide_repeat 1062 1108
IPR002885 Pentatricopeptide_repeat 964 1008
IPR002885 Pentatricopeptide_repeat 732 754
IPR002885 Pentatricopeptide_repeat 1036 1061
IPR002885 Pentatricopeptide_repeat 531 553
IPR002885 Pentatricopeptide_repeat 1135 1157
IPR002885 Pentatricopeptide_repeat 632 655
IPR002885 Pentatricopeptide_repeat 834 855
IPR002885 Pentatricopeptide_repeat 935 957
IPR002885 Pentatricopeptide_repeat 257 284
IPR032867 DYW_dom 1272 1363
IPR046848 E_motif 1177 1239
No external refs found!