1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g16169

Pnu_g16169


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Adi_g005730 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36522 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41640 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03649 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22058 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025053 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2580 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.03 OrthoFinder output from all 47 species
Ceric.14G058600.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g08229 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16544 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37317 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009974001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
GSVIVT01009977001 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017989001 LOI1, MEF11 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01023860001 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Gb_33439 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g03339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05976 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_30949g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
MA_9354530g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g19209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23157 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34228 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27823 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11736 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30070 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30311 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06477 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004484 No alias not classified & original description: CDS=1-2304 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009590 No alias not classified & original description: CDS=1-2562 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019309 No alias not classified & original description: CDS=1-1605 0.02 OrthoFinder output from all 47 species
Sam_g16206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114010.3.1 Solyc03g114010 Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species
Spa_g06411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 504 527
IPR002885 Pentatricopeptide_repeat 141 161
IPR002885 Pentatricopeptide_repeat 328 375
IPR002885 Pentatricopeptide_repeat 428 476
IPR002885 Pentatricopeptide_repeat 226 274
IPR046849 Eplus_motif 613 640
IPR032867 DYW_dom 644 679
IPR046848 E_motif 546 608
No external refs found!