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  5. Als_g62627

Als_g62627 (ATHPCAT2, HAC1, ATHAC1, PCAT2)


Aliases : ATHPCAT2, HAC1, ATHAC1, PCAT2

Description : component *(KIX) of PPD-KIX transcriptional repressor complex & original description: none


Gene families : OG0000672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000672_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g62627
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G16710 HAC12 histone acetyltransferase of the CBP family 12 0.03 OrthoFinder output from all 47 species
AT1G79000 ATHPCAT2, HAC1,... histone acetyltransferase of the CBP family 1 0.02 OrthoFinder output from all 47 species
Ala_g22443 ATHPCAT2, HAC1,... histone acetyltransferase *(HAC/HPCAT) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene22285.t1 ATHPCAT2, HAC1,... histone acetyltransferase *(HAC/HPCAT) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23782.t1 ATHPCAT2, HAC1,... component *(KIX) of PPD-KIX transcriptional repressor... 0.03 OrthoFinder output from all 47 species
Ceric.25G044800.1 ATHPCAT2, HAC1,... histone acetyltransferase *(HAC/HPCAT) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01029442001 ATHPCAT2, HAC1,... RNA biosynthesis.transcriptional activation.TAZ histone... 0.02 OrthoFinder output from all 47 species
Lfl_g33324 HAC12 component *(KIX) of PPD-KIX transcriptional repressor... 0.02 OrthoFinder output from all 47 species
Msp_g13659 ATHPCAT2, HAC1,... component *(KIX) of PPD-KIX transcriptional repressor... 0.04 OrthoFinder output from all 47 species
Pnu_g03881 ATHPCAT2, HAC1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 1047 1089
IPR000197 Znf_TAZ 646 715
IPR000197 Znf_TAZ 1614 1684
IPR013178 Histone_AcTrfase_Rtt109/CBP 1147 1383
IPR000433 Znf_ZZ 1424 1459
IPR000433 Znf_ZZ 1546 1588
No external refs found!