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  5. Als_g62734

Als_g62734


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g62734

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250660 OTP84,... Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT1G77170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059315 SLO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067920 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085794 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087178 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106085 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10029 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24083 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24236 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07268 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11529 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07836.t1 REME1, Aspi01Gene07836 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41775.t2 Aspi01Gene41775 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70663.t1 Aspi01Gene70663 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g030112 No alias not classified & original description: CDS=94-318 0.03 OrthoFinder output from all 47 species
Cba_g19296 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.03 OrthoFinder output from all 47 species
Ceric.36G033700.1 Ceric.36G033700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g03211 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18279 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42858 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42997 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g43192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
Lfl_g05691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434740g0010 OSB1 ssDNA-binding protein (OSB) 0.04 OrthoFinder output from all 47 species
Msp_g23166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23525 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02784 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18532 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57517 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06968 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g07569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011073 No alias not classified & original description: CDS=173-2326 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011578 OTP84 not classified & original description: CDS=1-2682 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013077 No alias not classified & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021590 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2022 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0243.g026662 No alias not classified & original description: CDS=264-2522 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1579.g028098 No alias not classified & original description: CDS=1-249 0.03 OrthoFinder output from all 47 species
Sam_g04999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo16626 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Smo96927 EMB2758 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Spa_g20286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 381
IPR002885 Pentatricopeptide_repeat 234 281
IPR002885 Pentatricopeptide_repeat 436 483
IPR002885 Pentatricopeptide_repeat 309 334
IPR002885 Pentatricopeptide_repeat 208 233
IPR002885 Pentatricopeptide_repeat 513 537
IPR002885 Pentatricopeptide_repeat 410 435
IPR002885 Pentatricopeptide_repeat 132 159
No external refs found!