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  5. Pnu_g16719

Pnu_g16719


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16719
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
AT5G03340 No alias ATPase, AAA-type, CDC48 protein 0.02 OrthoFinder output from all 47 species
Adi_g035605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080378 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058064 No alias platform ATPase CDC48 & original description: CDS=1-2484 0.03 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.02 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
Gb_24470 No alias platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18794 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41958 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR015415 Vps4_C 731 770
IPR041569 AAA_lid_3 404 446
IPR041569 AAA_lid_3 680 719
IPR003959 ATPase_AAA_core 525 658
IPR003959 ATPase_AAA_core 252 381
IPR003338 CDC4_N-term_subdom 37 118
IPR004201 Cdc48_dom2 139 202
No external refs found!