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  5. Pnu_g16845

Pnu_g16845 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16845

Target Alias Description ECC score Gene Family Method Actions
Ore_g27169 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000998 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 1433 1593
IPR000999 RNase_III_dom 1669 1781
IPR003100 PAZ_dom 1262 1396
IPR014720 dsRBD_dom 1809 1866
IPR001650 Helicase_C 704 820
IPR006935 Helicase/UvrB_N 307 468
No external refs found!