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  5. Pnu_g16921

Pnu_g16921 (ATHDA5, HDA05, HDA5)


Aliases : ATHDA5, HDA05, HDA5

Description : class-II histone deacetylase & original description: none


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16921

Target Alias Description ECC score Gene Family Method Actions
Aev_g06072 ATHDA5, HDA05, HDA5 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18820 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g20070.1 ATHDA5, HDA05, HDA5 class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Nbi_g08594 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 26 327
No external refs found!