Pnu_g18787 (TMO6)

Aliases : TMO6

Description : transcription factor *(DOF) & original description: none

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g18787
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00049300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AT5G62430	CDF1	cycling DOF factor 1	0.02	OrthoFinder output from all 47 species
Adi_g077026	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13677	CDF2	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18462	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g24626	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.19G013700.1	TMO6, Ceric.19G013700	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Dde_g29870	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18245	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
Gb_12877	HCA2, DOF5.6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Gb_23561	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g02150.1	OBP3, LOC_Os05g02150	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os12g38200.1	LOC_Os12g38200	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
MA_16692g0010	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Mp2g20790.1	TMO6	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Msp_g15852	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g03668	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10910	CDF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023228	No alias	transcription factor *(DOF) & original description: CDS=1-1353	0.02	OrthoFinder output from all 47 species
Solyc02g078620.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc06g071480.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc11g066050.1.1	Solyc11g066050	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc11g072500.2.1	TMO6, Solyc11g072500	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Spa_g08627	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g50770	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003086_P001	ADOF1, DOF1,...	transcription factor (DOF)	0.01	OrthoFinder output from all 47 species
Zm00001e005107_P001	ADOF1, DOF1,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e031750_P001	Zm00001e031750	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	7	63

External Links

No external refs found!

Pnu_g18787 (TMO6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation