1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g21379

Pnu_g21379


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g21379
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264470 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00007p00264500 evm_27.TU.AmTr_v1... Pectinesterase PPME1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G21610 ATPE11, PE11 pectinesterase 11 0.02 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G07430 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G19730 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003309 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g16111 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20723 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20976 QRT1 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g41068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16581 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16993 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23487 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47599 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56348 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02833 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06410 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11400 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14509 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16629 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01243 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04456 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05795.t1 Aspi01Gene05795 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07316.t2 VGDH1, Aspi01Gene07316 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49142.t1 Aspi01Gene49142 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59342.t1 Aspi01Gene59342 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59344.t1 Aspi01Gene59344 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59346.t1 Aspi01Gene59346 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59353.t1 Aspi01Gene59353 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59354.t1 Aspi01Gene59354 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008131 No alias pectin methylesterase & original description: CDS=1-870 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.03 OrthoFinder output from all 47 species
Azfi_s0648.g080900 No alias pectin methylesterase & original description: CDS=62-1303 0.02 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.14G017300.1 Ceric.14G017300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.19G035800.1 Ceric.19G035800 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.37G019000.1 Ceric.37G019000 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.37G019300.1 Ceric.37G019300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20667 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31792 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25225 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09802 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12103 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_39595 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os01g53990.1 LOC_Os01g53990 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os04g46740.1 LOC_Os04g46740 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Len_g29036 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10428610g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_18312g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp2g19430.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g06289 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37045 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39582 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42451 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g34778 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g38524 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g40521 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43683 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43955 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44819 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g59357 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20339 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_24000V3.1 Pp3c12_24000 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g00760 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14779 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60345 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010557 No alias pectin methylesterase & original description: CDS=267-1394 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015086 No alias pectin methylesterase & original description: CDS=460-1611 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016099 No alias pectin methylesterase & original description: CDS=1-1224 0.05 OrthoFinder output from all 47 species
Sam_g02095 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16125 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Solyc01g109740.3.1 ATPE11, PE11,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc02g075620.4.1 Solyc02g075620 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41355 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09242 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10170 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14064 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e035522_P001 QRT1, Zm00001e035522 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 73 366
No external refs found!