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  5. Pnu_g22342

Pnu_g22342 (LBD27, SCP)


Aliases : LBD27, SCP

Description : AS2/LOB-type transcription factor & original description: none


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g22342
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 LBD27, SCP,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00187850 LBD2,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
AMTR_s00041p00044170 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 OrthoFinder output from all 47 species
AMTR_s00058p00148530 LBD11,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 OrthoFinder output from all 47 species
AMTR_s00080p00153120 LBD1,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AT1G06280 LBD2 LOB domain-containing protein 2 0.05 OrthoFinder output from all 47 species
AT1G31320 LBD4 LOB domain-containing protein 4 0.02 OrthoFinder output from all 47 species
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.05 OrthoFinder output from all 47 species
AT1G72980 LBD7 LOB domain-containing protein 7 0.02 OrthoFinder output from all 47 species
AT2G28500 LBD11 LOB domain-containing protein 11 0.03 OrthoFinder output from all 47 species
AT2G30340 LBD13 LOB domain-containing protein 13 0.02 OrthoFinder output from all 47 species
AT2G31310 LBD14 LOB domain-containing protein 14 0.03 OrthoFinder output from all 47 species
AT2G42430 LBD16, ASL18 lateral organ boundaries-domain 16 0.01 OrthoFinder output from all 47 species
AT2G45420 LBD18 LOB domain-containing protein 18 0.03 OrthoFinder output from all 47 species
AT3G03760 LBD20 LOB domain-containing protein 20 0.05 OrthoFinder output from all 47 species
AT3G27650 LBD25 LOB domain-containing protein 25 0.03 OrthoFinder output from all 47 species
AT3G47870 LBD27, SCP LOB domain-containing protein 27 0.04 OrthoFinder output from all 47 species
AT3G50510 LBD28 LOB domain-containing protein 28 0.03 OrthoFinder output from all 47 species
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.07 OrthoFinder output from all 47 species
Adi_g013687 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15807 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27434 LBD25 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g29995 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13722 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68741 LBD22 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68836 LBD20 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70670 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15025.t1 LBD19, Aspi01Gene15025 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29461.t1 LOB, Aspi01Gene29461 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41937.t1 AS2, Aspi01Gene41937 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46359.t1 LBD4, Aspi01Gene46359 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65362.t1 AS2, Aspi01Gene65362 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0072.g037067 LBD4 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s3553.g116140 LBD25 AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.02G060200.1 LBD15, ASL11,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G090000.1 LBD20, Ceric.14G090000 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.34G046200.1 AS2, Ceric.34G046200 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G053800.1 LBD15, ASL11,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g06666 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09508 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20332 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32484 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24713 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29091 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46233 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46319 LBD20 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12391 LBD25 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26972 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004323001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01007677001 LOB RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01024662001 LBD12, ASL5, PCK1 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01029979001 LBD20 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01032592001 LBD27, SCP RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01032714001 LBD15, ASL11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 OrthoFinder output from all 47 species
Gb_00144 LBD4 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_02663 LBD18 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_16914 LBD1 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_19384 LBD11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_19390 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_19720 LBD27, SCP transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_20398 LBD15, ASL11 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_21467 LBD22 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_38119 LBD4 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Gb_38978 LBD15, ASL11 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os01g14030.1 LBD2, LOC_Os01g14030 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
LOC_Os01g56530.1 LBD20, LOC_Os01g56530 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05500.1 LBD29, ASL16,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g17810.1 LBD11, LOC_Os03g17810 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os05g07270.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
LOC_Os05g27980.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
LOC_Os10g07510.1 LBD18, LOC_Os10g07510 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Len_g55694 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29029 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32426 AS2 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37300 LBD4 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434193g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_10434782g0020 AS2 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_126761g0010 LBD20 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_127139g0010 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_16646g0010 LBD27, SCP transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_292200g0010 LBD11 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_88711g0010 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_962403g0010 LBD19 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
MA_97411g0010 LBD29, ASL16 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_9839150g0010 LBD1 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp4g02620.1 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Mp4g10500.1 LBD25 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Mp5g17820.1 LBD25 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Mp7g00650.1 ASL1, LBD36 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp7g14810.1 LBD25 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Mpzg01450.1 No alias transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Msp_g28887 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43952 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44204 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44922 LBD20 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43401 No alias AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43402 LBD22 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43000 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56591 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25313 AS2 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09676 LBD20 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11808 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14631 LBD22 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17986 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27127 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020470 LOB AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0186.g025054 LBD20 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0188.g025166 LOB AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g10179 No alias AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091420.2.1 LBD18, Solyc01g091420 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc01g098220.2.1 LBD20, Solyc01g098220 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc02g069440.3.1 LBD4, Solyc02g069440 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc03g095940.1.1 LBD21, Solyc03g095940 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc05g048740.3.1 LBD11, Solyc05g048740 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Solyc06g005090.3.1 LBD11, Solyc06g005090 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc06g082310.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g082430.2.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc09g066260.4.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc09g066270.3.1 LBD29, ASL16,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Spa_g29522 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40992 LOB AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g49778 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05369 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000390_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e000391_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e001031_P001 LBD18, Zm00001e001031 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e019686_P001 LBD20, Zm00001e019686 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e026736_P001 LBD15, ASL11,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e030195_P001 LBD2, Zm00001e030195 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e031510_P001 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e038582_P001 LBD18, Zm00001e038582 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e038981_P001 Zm00001e038981 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Zm00001e042347_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e042443_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e042444_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e042448_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 10 107
No external refs found!