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  5. Pnu_g22838

Pnu_g22838


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g22838
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
Adi_g061193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16840 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22600 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30592 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g52616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001369 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: CDS=172-2610 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.02 OrthoFinder output from all 47 species
Azfi_s0061.g034904 No alias not classified & original description: CDS=1-1944 0.04 OrthoFinder output from all 47 species
Azfi_s0236.g059498 No alias not classified & original description: CDS=1-2331 0.03 OrthoFinder output from all 47 species
Azfi_s0282.g063034 No alias not classified & original description: CDS=389-4795 0.03 OrthoFinder output from all 47 species
Azfi_s0312.g064188 No alias not classified & original description: CDS=1-2817 0.02 OrthoFinder output from all 47 species
Azfi_s0380.g067373 No alias not classified & original description: CDS=1-3669 0.02 OrthoFinder output from all 47 species
Cba_g07200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20438 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29689 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.02 OrthoFinder output from all 47 species
Ceric.17G054900.1 DOT4, Ceric.17G054900 not classified & original description: pacid=50617812... 0.02 OrthoFinder output from all 47 species
Ceric.18G024700.1 Ceric.18G024700 not classified & original description: pacid=50621916... 0.03 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Dac_g07040 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g08183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27114 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05563 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35843 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23896 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35433 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g39002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g40573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20526 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012201001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Gb_06568 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g00981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03897 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54314 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_39595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Msp_g20531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03793 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04436 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06762 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16161 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17865 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30093 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30095 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33734 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62708 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004867 No alias not classified & original description: CDS=342-1943 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005856 No alias not classified & original description: CDS=1-2292 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007537 No alias not classified & original description: CDS=117-2237 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016873 No alias not classified & original description: CDS=1-2589 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022971 No alias not classified & original description: CDS=343-1173 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0260.g026882 No alias not classified & original description: CDS=1-687 0.02 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20297 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23977 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019971_P001 Zm00001e019971 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004358 glutamate N-acetyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008716 D-alanine-D-alanine ligase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 192 254
IPR002885 Pentatricopeptide_repeat 77 107
IPR002885 Pentatricopeptide_repeat 112 139
IPR002885 Pentatricopeptide_repeat 49 74
IPR002885 Pentatricopeptide_repeat 149 172
IPR032867 DYW_dom 290 382
No external refs found!