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  5. Pnu_g23568

Pnu_g23568


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g23568
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015988 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025081 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087178 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17592 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03252 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19189 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g39864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04901.t1 Aspi01Gene04901 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.02 OrthoFinder output from all 47 species
Azfi_s0061.g034904 No alias not classified & original description: CDS=1-1944 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042774 No alias not classified & original description: CDS=1-2433 0.03 OrthoFinder output from all 47 species
Azfi_s0312.g064188 No alias not classified & original description: CDS=1-2817 0.03 OrthoFinder output from all 47 species
Cba_g03378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07466 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.03 OrthoFinder output from all 47 species
Ceric.14G059500.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
Dcu_g20520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15077 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007452 No alias not classified & original description: CDS=1-2322 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015410 No alias not classified & original description: CDS=1-2730 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020144 No alias not classified & original description: CDS=1-1437 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025546 No alias not classified & original description: CDS=1-3414 0.03 OrthoFinder output from all 47 species
Sam_g22188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g23134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Tin_g30348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019971_P001 Zm00001e019971 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 22 69
IPR002885 Pentatricopeptide_repeat 224 271
IPR046848 E_motif 341 402
IPR002885 Pentatricopeptide_repeat 298 321
IPR002885 Pentatricopeptide_repeat 198 223
No external refs found!