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  5. AT1G01780

AT1G01780


Description : GATA type zinc finger transcription factor family protein


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01780
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.07 OrthoFinder output from all 47 species
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
Adi_g004397 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g106595 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106596 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06316 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G018100.1 WLIM1, Ceric.11G018100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G067600.1 WLIM1, Ceric.34G067600 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g30378 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g14000 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g15259 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.06 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.09 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31657 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07460 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14488 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g094320.3.1 Solyc01g094320 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc03g114000.3.1 WLIM1, Solyc03g114000 transcription factor (LIM) 0.07 OrthoFinder output from all 47 species
Solyc06g071310.4.1 WLIM1, Solyc06g071310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Solyc08g080740.3.1 Solyc08g080740 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc11g044740.2.1 WLIM1, Solyc11g044740 transcription factor (LIM) 0.06 OrthoFinder output from all 47 species
Spa_g41003 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.11 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0015629 actin cytoskeleton IDA Interproscan
MF GO:0051015 actin filament binding IDA Interproscan
BP GO:0051017 actin filament bundle assembly IDA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001781 Znf_LIM 104 159
IPR001781 Znf_LIM 10 65
No external refs found!