AT1G02340 (HFR1, FBI1, REP1, RSF1)

Aliases : HFR1, FBI1, REP1, RSF1

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02340

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00228970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AT1G03040	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g041243	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g041404	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g042065	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g01300	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g19667	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28350	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g31869	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g00973	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22777	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18590	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g64342	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14949.t1	LRL3, Aspi01Gene14949	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene40972.t1	PIF3, POC1,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene67543.t1	SPT, Aspi01Gene67543	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0054.g033854	No alias	bHLH-type transcription factor & original description: CDS=1-1758	0.02	OrthoFinder output from all 47 species
Cba_g13645	LRL3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g15802	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cre14.g620850	BIM2	RNA biosynthesis.transcriptional activation.bHLH...	0.01	OrthoFinder output from all 47 species
GSVIVT01004930001	No alias	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
GSVIVT01026516001	HEC3	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Gb_05320	LRL3	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os05g46370.1	LOC_Os05g46370	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Lfl_g06729	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26119	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g39067	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Mp3g17350.1	SPT	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Mpzg01410.1	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Ore_g08799	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42592	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26288	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g57337	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08374	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g044460.1.1	HEC2, Solyc03g044460	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc04g005130.3.1	Solyc04g005130	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Spa_g40542	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e018946_P001	Zm00001e018946	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e034528_P001	Zm00001e034528	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003712	transcription coregulator activity	IMP	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	TAS	Interproscan
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	TAS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009637	response to blue light	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009642	response to light intensity	IEP	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009785	blue light signaling pathway	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	RCA	Interproscan
BP	GO:0016567	protein ubiquitination	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030522	intracellular receptor signaling pathway	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071483	cellular response to blue light	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003995	acyl-CoA dehydrogenase activity	IEP	HCCA
MF	GO:0004792	thiosulfate sulfurtransferase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006551	leucine metabolic process	IEP	HCCA
BP	GO:0006552	leucine catabolic process	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008470	isovaleryl-CoA dehydrogenase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009083	branched-chain amino acid catabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009641	shade avoidance	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
MF	GO:0052890	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	144	184

External Links

No external refs found!

AT1G02340 (HFR1, FBI1, REP1, RSF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation