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AT1G02870


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).


Gene families : OG0005949 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005949_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G02870

Target Alias Description ECC score Gene Family Method Actions
Cre17.g726650 No alias No description available 0.04 OrthoFinder output from all 47 species
Mp1g07200.1 No alias pre-60S ribosomal subunit assembly factor (NOP16) 0.02 OrthoFinder output from all 47 species
Pp3c25_320V3.1 Pp3c25_320 No annotation 0.01 OrthoFinder output from all 47 species
Solyc09g075030.3.1 Solyc09g075030 pre-60S ribosomal subunit assembly factor (NOP16) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
InterPro domains Description Start Stop
IPR019002 Ribosome_biogenesis_Nop16 97 181
IPR019002 Ribosome_biogenesis_Nop16 3 78
No external refs found!