AT1G04400 (ATCRY2, CRY2, PHH1,...)

Aliases : ATCRY2, CRY2, PHH1, AT-PHH1, FHA

Description : cryptochrome 2

Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G04400
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
Ala_g05464	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g21204	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g50535	HY4, ATCRY1,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene14272.t1	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0229.g059128	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021579.19	ATCRY2, CRY2,...	Cryptochrome-1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dde_g07223	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009033001	HY4, ATCRY1,...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
Ore_g09432	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g090100.3.1	ATCRY2, CRY2,...	cryptochrome photoreceptor (CRY)	0.03	OrthoFinder output from all 47 species
Tin_g19707	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
BP	GO:0006325	chromatin organization	IMP	Interproscan
BP	GO:0006338	chromatin remodeling	IMP	Interproscan
BP	GO:0006873	cellular monoatomic ion homeostasis	None	Extended
BP	GO:0006874	cellular calcium ion homeostasis	None	Extended
BP	GO:0006875	cellular metal ion homeostasis	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007623	circadian rhythm	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009414	response to water deprivation	IGI	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009416	response to light stimulus	IEP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	IMP	Interproscan
BP	GO:0009638	phototropism	IGI	Interproscan
MF	GO:0009881	photoreceptor activity	None	Extended
MF	GO:0009882	blue light photoreceptor activity	ISS	Interproscan
BP	GO:0009909	regulation of flower development	IDA	Interproscan
BP	GO:0009911	positive regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010075	regulation of meristem growth	IGI	Interproscan
BP	GO:0010118	stomatal movement	IGI	Interproscan
BP	GO:0010617	circadian regulation of calcium ion oscillation	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	cellular monoatomic cation homeostasis	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0042744	hydrogen peroxide catabolic process	RCA	Interproscan
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IPI	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051480	regulation of cytosolic calcium ion concentration	None	Extended
BP	GO:0055065	metal ion homeostasis	None	Extended
BP	GO:0055074	calcium ion homeostasis	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009967	positive regulation of signal transduction	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010647	positive regulation of cell communication	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023056	positive regulation of signaling	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
BP	GO:0051341	regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1902551	regulation of catalase activity	IEP	HCCA
BP	GO:1902553	positive regulation of catalase activity	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:2000468	regulation of peroxidase activity	IEP	HCCA
BP	GO:2000470	positive regulation of peroxidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005101	Cryptochr/Photolyase_FAD-bd	287	484
IPR006050	DNA_photolyase_N	7	162

External Links

No external refs found!

AT1G04400 (ATCRY2, CRY2, PHH1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation