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  5. AT1G04600

AT1G04600 (XIA, ATXIA)


Aliases : XIA, ATXIA

Description : myosin XI A


Gene families : OG0000203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G04600
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT5G20450 No alias CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);... 0.04 OrthoFinder output from all 47 species
Adi_g089073 ATVIIIA, VIIIA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g104759 ATM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71810.t1 ATVIIIA, VIIIA,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000367.45 XI-6, ATMYA2, XI-2, MYA2 Myosin-6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.58 XI-8, XI-B, XIB, ATXIB Myosin-8 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01005233001 XIA, ATXIA Myosin-6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os06g29350.1 ATXIE, XIE,... class XI myosin microfilament-based motor protein 0.03 OrthoFinder output from all 47 species
Len_g08332 ATXIK, XI-17, XIK class XI myosin microfilament-based motor protein &... 0.02 OrthoFinder output from all 47 species
Pnu_g13852 XIF, ATMYO5, ATXIF not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016948 ATXIK, XI-17, XIK class XI myosin microfilament-based motor protein &... 0.03 OrthoFinder output from all 47 species
Sam_g04356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18055 No alias class XI myosin microfilament-based motor protein &... 0.02 OrthoFinder output from all 47 species
Smo174533 XIC, ATXIC Cytoskeleton.microfilament network.myosin... 0.02 OrthoFinder output from all 47 species
Smo230820 ATXIK, XI-17, XIK Cytoskeleton.microfilament network.myosin... 0.03 OrthoFinder output from all 47 species
Zm00001e012626_P001 ATVIIIA, VIIIA,... class VIII myosin microfilament-based motor protein 0.03 OrthoFinder output from all 47 species
Zm00001e012846_P002 XI-15, ATXI-I,... Myosin-15 OS=Arabidopsis thaliana (sp|q0wpu1|myo15_arath : 696.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity ISS Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
CC GO:0016459 myosin complex ISS Interproscan
BP GO:0030036 actin cytoskeleton organization RCA Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
BP GO:0030048 actin filament-based movement TAS Interproscan
BP GO:0051645 Golgi localization RCA Interproscan
BP GO:0051646 mitochondrion localization RCA Interproscan
BP GO:0060151 peroxisome localization RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
InterPro domains Description Start Stop
IPR002710 Dilute_dom 1553 1656
IPR001609 Myosin_head_motor_dom 63 719
IPR004009 Myosin_N 10 47
IPR000048 IQ_motif_EF-hand-BS 831 850
IPR000048 IQ_motif_EF-hand-BS 855 874
No external refs found!