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  5. AT1G07070

AT1G07070


Description : Ribosomal protein L35Ae family protein


Gene families : OG0000881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000881_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G07070
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00195890 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Adi_g092458 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g123725 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g126470 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aev_g28061 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g46085 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g22035 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g23556 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g13844 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g22626 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g28942 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aop_g32442 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Aop_g51649 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g56103 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g66934 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0037.g026089 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0048.g030566 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g08233 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g08507 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.13G067800.1 Ceric.13G067800 component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.23 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Cre10.g459250 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Dac_g01908 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dac_g27352 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dac_g28494 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g41166 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g24483 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g24788 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01016386001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01034025001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Gb_35488 No alias component RPL35a of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os02g54470.1 LOC_Os02g54470 component RPL35a of LSU proteome component 0.17 OrthoFinder output from all 47 species
LOC_Os05g48310.1 LOC_Os05g48310 component RPL35a of LSU proteome component 0.01 OrthoFinder output from all 47 species
Len_g35522 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g11760 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g19455 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g20396 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g29504 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_79041g0010 No alias component RPL35a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp1g11470.1 No alias component RPL35a of LSU proteome component 0.14 OrthoFinder output from all 47 species
Msp_g02611 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Msp_g37937 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g03777 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pnu_g33375 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_9630V3.1 Pp3c11_9630 Ribosomal protein L35Ae family protein 0.1 OrthoFinder output from all 47 species
Pp3c3_3480V3.1 Pp3c3_3480 Ribosomal protein L35Ae family protein 0.09 OrthoFinder output from all 47 species
Pp3c4_29970V3.1 Pp3c4_29970 Ribosomal protein L35Ae family protein 0.07 OrthoFinder output from all 47 species
Ppi_g13400 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g16498 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g25850 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0278.g027080 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g00161 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05626 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g21165 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g24989 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g28484 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g38110 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g38788 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g42222 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Smo184773 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Solyc03g096360.4.1 Solyc03g096360 component RPL35a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Solyc05g052800.3.1 Solyc05g052800 component RPL35a of LSU proteome component 0.22 OrthoFinder output from all 47 species
Solyc05g052810.4.1 Solyc05g052810 component RPL35a of LSU proteome component 0.21 OrthoFinder output from all 47 species
Spa_g05815 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g43199 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g02369 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e009729_P001 Zm00001e009729 component RPL35a of LSU proteome component 0.22 OrthoFinder output from all 47 species
Zm00001e023741_P003 Zm00001e023741 component RPL35a of LSU proteome component 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
MF GO:0016018 cyclosporin A binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 12 106
No external refs found!