AT1G08620 (PKDM7D)

Aliases : PKDM7D

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08620

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00253500	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.JUMONJI...	0.07	OrthoFinder output from all 47 species
AMTR_s00067p00062020	PKDM7D,...	RNA biosynthesis.transcriptional activation.JUMONJI...	0.02	OrthoFinder output from all 47 species
Adi_g042525	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g055868	No alias	histone demethylase *(KDM5) & original description: none	0.09	OrthoFinder output from all 47 species
Adi_g107372	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06155	PKDM7D	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g15008	No alias	histone demethylase *(KDM5) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g08112	No alias	histone demethylase *(KDM5) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g05144	No alias	histone demethylase *(KDM5) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g13634	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g17236	No alias	histone demethylase *(KDM5) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene68630.t1	PKDM7D, Aspi01Gene68630	histone demethylase *(PKDM7) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000131	PKDM7D	histone demethylase *(PKDM7) & original description: CDS=166-5457	0.04	OrthoFinder output from all 47 species
Ceric.01G024900.1	Ceric.01G024900	histone demethylase *(KDM5) & original description:...	0.1	OrthoFinder output from all 47 species
Ceric.09G000100.1	PKDM7D, Ceric.09G000100	histone demethylase *(PKDM7) & original description:...	0.07	OrthoFinder output from all 47 species
Ceric.28G058700.1	PKDM7D, Ceric.28G058700	histone demethylase *(PKDM7) & original description:...	0.03	OrthoFinder output from all 47 species
Cre03.g169950	PKDM7D	RNA biosynthesis.transcriptional activation.JUMONJI...	0.02	OrthoFinder output from all 47 species
Cre12.g514250	No alias	RNA biosynthesis.transcriptional activation.JUMONJI...	0.02	OrthoFinder output from all 47 species
Dcu_g07179	No alias	histone demethylase *(KDM5) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g14428	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01019761001	No alias	RNA biosynthesis.transcriptional activation.JUMONJI...	0.08	OrthoFinder output from all 47 species
GSVIVT01023517001	PKDM7D	RNA biosynthesis.transcriptional activation.JUMONJI...	0.15	OrthoFinder output from all 47 species
GSVIVT01028351001	PKDM7D	RNA biosynthesis.transcriptional activation.JUMONJI...	0.04	OrthoFinder output from all 47 species
GSVIVT01037956001	PKDM7B, JMJ14	RNA biosynthesis.transcriptional activation.JUMONJI...	0.04	OrthoFinder output from all 47 species
Gb_26073	No alias	histone demethylase (KDM5). transcription factor (JUMONJI)	0.05	OrthoFinder output from all 47 species
Gb_27431	PKDM7D	histone demethylase (PKDM7). transcription factor (JUMONJI)	0.04	OrthoFinder output from all 47 species
LOC_Os05g10770.1	PKDM7D, LOC_Os05g10770	histone demethylase (PKDM7). transcription factor (JUMONJI)	0.04	OrthoFinder output from all 47 species
Len_g14189	No alias	histone demethylase *(KDM5) & original description: none	0.05	OrthoFinder output from all 47 species
Len_g18977	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.07	OrthoFinder output from all 47 species
Lfl_g04296	No alias	histone demethylase *(KDM5) & original description: none	0.07	OrthoFinder output from all 47 species
MA_10434186g0010	PKDM7D	histone demethylase (PKDM7). transcription factor (JUMONJI)	0.09	OrthoFinder output from all 47 species
MA_10436180g0010	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
MA_11526g0010	No alias	Putative lysine-specific demethylase JMJ16...	0.06	OrthoFinder output from all 47 species
MA_91656g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp6g20340.1	PKDM7D	histone demethylase (PKDM7). transcription factor (JUMONJI)	0.04	OrthoFinder output from all 47 species
Mp8g17910.1	No alias	histone demethylase (KDM5). transcription factor (JUMONJI)	0.09	OrthoFinder output from all 47 species
Msp_g13349	No alias	histone demethylase *(KDM5) & original description: none	0.1	OrthoFinder output from all 47 species
Nbi_g02485	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g38705	No alias	histone demethylase *(KDM5) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g15994	No alias	histone demethylase *(KDM5) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g58500	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848	No alias	histone demethylase *(KDM5) & original description: CDS=319-5874	0.04	OrthoFinder output from all 47 species
Sam_g11634	No alias	histone demethylase *(KDM5) & original description: none	0.08	OrthoFinder output from all 47 species
Sam_g18668	No alias	histone demethylase *(PKDM7) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc08g081000.3.1	Solyc08g081000	histone demethylase (KDM5). transcription factor (JUMONJI)	0.06	OrthoFinder output from all 47 species
Spa_g17545	No alias	histone demethylase *(KDM5) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g12700	No alias	histone demethylase *(KDM5) & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e030938_P001	PKDM7D, Zm00001e030938	histone demethylase (PKDM7). transcription factor (JUMONJI)	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
MF	GO:0000285	1-phosphatidylinositol-3-phosphate 5-kinase activity	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
MF	GO:0008281	sulfonylurea receptor activity	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010256	endomembrane system organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0030007	cellular potassium ion homeostasis	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
CC	GO:0031209	SCAR complex	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055075	potassium ion homeostasis	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090332	stomatal closure	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003888	FYrich_N	988	1029
IPR004198	Znf_C5HC2	617	667
IPR003349	JmjN	147	180
IPR003889	FYrich_C	1037	1120
IPR003347	JmjC_dom	394	510

External Links

No external refs found!

AT1G08620 (PKDM7D)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation