AT1G09130

Description : ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G09130
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00194810	CLPR4,...	Protein degradation.peptidase families.serine-type...	0.03	OrthoFinder output from all 47 species
AMTR_s00164p00068000	CLPR1, SVR2,...	Protein degradation.peptidase families.serine-type...	0.03	OrthoFinder output from all 47 species
Adi_g019566	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Adi_g074670	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Aev_g07767	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Ala_g09550	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Als_g00665	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Aob_g22566	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Aop_g23397	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Azfi_s0015.g013857	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Cba_g08836	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Cba_g15422	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Cba_g25400	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Ceric.03G040500.1	CLPR1, SVR2,...	non-proteolytic core component *(ClpR) of chloroplast...	0.07	OrthoFinder output from all 47 species
Dac_g06754	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Dac_g10911	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.09	OrthoFinder output from all 47 species
Dcu_g02591	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Dcu_g11508	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.05	OrthoFinder output from all 47 species
Dcu_g17058	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.05	OrthoFinder output from all 47 species
Dde_g02711	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Dde_g03225	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.05	OrthoFinder output from all 47 species
Dde_g21817	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.05	OrthoFinder output from all 47 species
Ehy_g01031	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Gb_12676	No alias	non-proteolytic core component ClpR of chloroplast...	0.04	OrthoFinder output from all 47 species
LOC_Os03g22430.1	LOC_Os03g22430	non-proteolytic core component ClpR of chloroplast...	0.02	OrthoFinder output from all 47 species
Len_g08627	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.06	OrthoFinder output from all 47 species
Len_g10203	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.05	OrthoFinder output from all 47 species
Lfl_g01084	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
MA_10429819g0020	CLPR1, SVR2, NCLPP5	non-proteolytic core component ClpR of chloroplast...	0.03	OrthoFinder output from all 47 species
MA_6114g0010	No alias	ATP-dependent Clp protease proteolytic subunit-related...	0.04	OrthoFinder output from all 47 species
Msp_g06430	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Nbi_g04693	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Nbi_g05257	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.09	OrthoFinder output from all 47 species
Nbi_g11210	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Pir_g12837	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Pnu_g07357	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Pnu_g12637	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007703	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.02	OrthoFinder output from all 47 species
Sam_g17176	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.06	OrthoFinder output from all 47 species
Sam_g17177	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Sam_g52083	No alias	non-proteolytic core component *(ClpR) of chloroplast...	0.04	OrthoFinder output from all 47 species
Solyc01g099690.3.1	Solyc01g099690	non-proteolytic core component ClpR of chloroplast...	0.06	OrthoFinder output from all 47 species
Solyc08g077890.3.1	CLPR4, Solyc08g077890	non-proteolytic core component ClpR of chloroplast...	0.04	OrthoFinder output from all 47 species
Solyc10g049710.2.1	CLPR1, SVR2,...	non-proteolytic core component ClpR of chloroplast...	0.05	OrthoFinder output from all 47 species
Spa_g11689	CLPR1, SVR2, NCLPP5	non-proteolytic core component *(ClpR) of chloroplast...	0.06	OrthoFinder output from all 47 species
Spa_g12805	CLPR4	non-proteolytic core component *(ClpR) of chloroplast...	0.03	OrthoFinder output from all 47 species
Spa_g55823	CLPR4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e032571_P001	CLPR1, SVR2,...	non-proteolytic core component ClpR of chloroplast...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
CC	GO:0009368	endopeptidase Clp complex	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010190	cytochrome b6f complex assembly	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0080005	photosystem stoichiometry adjustment	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023562	ClpP/TepA	123	303

External Links

No external refs found!

AT1G09130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation