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AT1G11980 (RUB3)


Aliases : RUB3

Description : ubiquitin-related protein 3


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G11980

Target Alias Description ECC score Gene Family Method Actions
AT1G53930 No alias Ubiquitin-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g13089 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09276 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g41833 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58845 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g21615 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04828.t1 UBQ11, Aspi01Gene04828 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08341.t1 UBQ11, Aspi01Gene08341 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43648 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G024100.1 UBQ11, Ceric.05G024100 UBQ ubiquitin-fold protein & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.29G037800.1 UBQ3, Ceric.29G037800 UBQ ubiquitin-fold protein & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.29G037900.1 UBQ3, Ceric.29G037900 UBQ ubiquitin-fold protein & original description:... 0.02 OrthoFinder output from all 47 species
LOC_Os01g45400.1 RUB1, ATRUB1,... ubiquitin-fold protein (UBQ). ubiquitin-fold protein (RUB) 0.08 OrthoFinder output from all 47 species
LOC_Os07g30640.1 LOC_Os07g30640 component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os10g34990.1 LOC_Os10g34990 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 47 species
LOC_Os10g39590.1 LOC_Os10g39590 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10435699g0010 No alias component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_13954g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_89348g0010 UBQ14 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Mp6g03960.1 UBQ4 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Msp_g17628 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20581 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g39867 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16415 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g36528 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g41891 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30323 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!