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  5. AT1G13780

AT1G13780


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0007014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13780

Target Alias Description ECC score Gene Family Method Actions
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT1G66640 No alias RNI-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G69630 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G78760 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G18770 No alias F-box/FBD-like domains containing protein 0.03 OrthoFinder output from all 47 species
AT5G22600 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 OrthoFinder output from all 47 species
AT5G22720 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
MF GO:0010428 methyl-CpNpG binding IEP HCCA
MF GO:0010429 methyl-CpNpN binding IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0031445 regulation of heterochromatin formation IEP HCCA
BP GO:0031453 positive regulation of heterochromatin formation IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048445 carpel morphogenesis IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0120261 regulation of heterochromatin organization IEP HCCA
BP GO:0120263 positive regulation of heterochromatin organization IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1902275 regulation of chromatin organization IEP HCCA
BP GO:1905269 positive regulation of chromatin organization IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 168 195
IPR001810 F-box_dom 11 48
IPR006566 FBD 379 422
No external refs found!