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  5. AT1G16480

AT1G16480


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G16480
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 OTP81 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g003303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034178 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060846 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16335 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17028 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g30892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33642 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g60598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08600.t1 Aspi01Gene08600 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14586.t2 Aspi01Gene14586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007938 No alias not classified & original description: CDS=1-4179 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011983 No alias not classified & original description: CDS=1-2745 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023827 No alias not classified & original description: CDS=1-3255 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025537 No alias ssDNA-binding protein *(OSB) & original description: CDS=167-2242 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.01 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.01 OrthoFinder output from all 47 species
Cba_g05935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G031300.1 Ceric.01G031300 not classified & original description: pacid=50591599... 0.01 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.02 OrthoFinder output from all 47 species
Ceric.07G042200.1 Ceric.07G042200 not classified & original description: pacid=50626031... 0.01 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.02 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.01 OrthoFinder output from all 47 species
Ceric.22G073800.1 Ceric.22G073800 not classified & original description: pacid=50614043... 0.02 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.01 OrthoFinder output from all 47 species
Dac_g07481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43531 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05274 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g07156 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g28293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g03977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22169 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.01 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g02911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36740 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07842 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10692 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g04413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24078 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31719 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34533 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g43591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15172 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16442 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04075 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30084 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03245 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g32958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo108652 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo122934 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc01g098480.3.1 Solyc01g098480 Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species
Solyc03g115800.1.1 Solyc03g115800 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Spa_g40438 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26778 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g27746 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g35082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019482_P001 Zm00001e019482 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
Zm00001e040920_P001 Zm00001e040920 Pentatricopeptide repeat-containing protein At3g26540... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0009504 cell plate IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 224
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 126 156
IPR002885 Pentatricopeptide_repeat 531 561
IPR002885 Pentatricopeptide_repeat 227 254
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 328 357
IPR002885 Pentatricopeptide_repeat 503 527
IPR032867 DYW_dom 804 927
IPR002885 Pentatricopeptide_repeat 427 473
IPR002885 Pentatricopeptide_repeat 633 677
No external refs found!