1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G17970

AT1G17970


Description : RING/U-box superfamily protein


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G17970

Target Alias Description ECC score Gene Family Method Actions
AT4G00070 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G34040 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g52753 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene44721.t1 Aspi01Gene44721 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55614.t1 Aspi01Gene55614 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038411 No alias not classified & original description: CDS=856-2112 0.05 OrthoFinder output from all 47 species
Cba_g16424 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g12648 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os04g51400.2 LOC_Os04g51400 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Lfl_g02231 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g04359 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g15282 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g18552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g096420.2.1 Solyc12g096420 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000578 embryonic axis specification IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009638 phototropism IEP HCCA
MF GO:0009672 auxin:proton symporter activity IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0009942 longitudinal axis specification IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010044 response to aluminum ion IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
MF GO:0010329 auxin efflux transmembrane transporter activity IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:monoatomic cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
MF GO:0080161 auxin transmembrane transporter activity IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 319 361
No external refs found!