AT1G18560

Description : BED zinc finger ;hAT family dimerisation domain

Gene families : OG0005372 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005372_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G18560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00136180	No alias	Zinc finger BED domain-containing protein RICESLEEPER 2...	0.04	OrthoFinder output from all 47 species
Pir_g33844	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g007470.4.1	Solyc10g007470	Zinc finger BED domain-containing protein RICESLEEPER 1...	0.02	OrthoFinder output from all 47 species
Solyc10g007810.3.1	Solyc10g007810	Zinc finger BED domain-containing protein RICESLEEPER 1...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000795	synaptonemal complex	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
CC	GO:0099086	synaptonemal structure	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003656	Znf_BED	56	97
IPR025525	hAT-like_transposase_RNase-H	430	509
IPR008906	HATC_C_dom	569	649

External Links

No external refs found!