AT1G19000

Description : Homeodomain-like superfamily protein

Gene families : OG0000160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G19000

Target	Alias	Description	ECC score	Gene Family Method
AT3G11280	No alias	Duplicated homeodomain-like superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g007078	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Adi_g087984	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Aev_g24499	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Aev_g24500	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Als_g11877	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Ceric.11G039500.1	Ceric.11G039500	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ceric.16G031800.1	Ceric.16G031800	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01016996001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01020132001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
Gb_05002	No alias	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
LOC_Os01g09640.1	LOC_Os01g09640	transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species
LOC_Os05g10690.1	LOC_Os05g10690	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
MA_209399g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g10595	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g23525	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Ore_g29105	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g13729	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Sam_g50035	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Smo84280	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.05	OrthoFinder output from all 47 species
Solyc03g096350.3.1	Solyc03g096350	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Solyc04g005100.3.1	Solyc04g005100	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Solyc05g052610.3.1	Solyc05g052610	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Solyc07g026680.2.1	Solyc07g026680	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Zm00001e002313_P001	Zm00001e002313	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Zm00001e019254_P001	Zm00001e019254	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Zm00001e027835_P005	Zm00001e027835	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
CC	GO:0005782	peroxisomal matrix	IEP	HCCA
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
BP	GO:0016560	protein import into peroxisome matrix, docking	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
CC	GO:0031907	microbody lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051341	regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:1902551	regulation of catalase activity	IEP	HCCA
BP	GO:1902553	positive regulation of catalase activity	IEP	HCCA
BP	GO:2000468	regulation of peroxidase activity	IEP	HCCA
BP	GO:2000470	positive regulation of peroxidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	103	147

External Links

No external refs found!

AT1G19000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation