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  5. AT1G19880

AT1G19880


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG0004526 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19880

Target Alias Description ECC score Gene Family Method Actions
Als_g14897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29594 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c23_7830V3.1 Pp3c23_7830 Regulator of chromosome condensation (RCC1) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g03042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g081200.3.1 Solyc04g081200 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000098 sulfur amino acid catabolic process IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009093 cysteine catabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0019448 L-cysteine catabolic process IEP HCCA
BP GO:0019450 L-cysteine catabolic process to pyruvate IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0046439 L-cysteine metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0080146 L-cysteine desulfhydrase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 191 250
IPR000408 Reg_chr_condens 128 180
IPR000408 Reg_chr_condens 359 405
IPR000408 Reg_chr_condens 253 291
IPR000408 Reg_chr_condens 76 125
No external refs found!