AT1G19890 (ATMGH3, MGH3)

Aliases : ATMGH3, MGH3

Description : male-gamete-specific histone H3

Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G19890
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
Als_g43453	No alias	histone *(H3) & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g33085	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z177000.1	Ceric.1Z177000	histone *(H3) & original description: pacid=50628432...	0.02	OrthoFinder output from all 47 species
Ceric.27G024400.1	Ceric.27G024400	histone *(H3) & original description: pacid=50605092...	0.02	OrthoFinder output from all 47 species
Ceric.27G029000.1	Ceric.27G029000	histone *(H3) & original description: pacid=50605580...	0.01	OrthoFinder output from all 47 species
Ceric.37G016300.1	Ceric.37G016300	histone *(H3) & original description: pacid=50616425...	0.02	OrthoFinder output from all 47 species
Cre06.g265250	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g266650	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g267950	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g274000	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g274101	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g274350	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g274850	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g275750	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g276600	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre06.g276850	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre12.g504650	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre12.g504800	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre12.g505500	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre12.g506300	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre12.g506500	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre13.g569950	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre17.g708150	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre17.g708700	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Cre17.g709050	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from all 47 species
Dde_g01902	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g36746	No alias	histone *(H3) & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01027073001	HTR12, CENH3	Cell cycle.mitosis and meiosis.chromosome...	0.02	OrthoFinder output from all 47 species
Gb_29026	No alias	histone (H3)	0.03	OrthoFinder output from all 47 species
Gb_30564	No alias	histone (H3)	0.01	OrthoFinder output from all 47 species
Len_g04468	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g05015	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Mp3g07730.1	No alias	histone (H3)	0.02	OrthoFinder output from all 47 species
Mp3g09090.1	No alias	histone (H3)	0.01	OrthoFinder output from all 47 species
Mp7g10730.1	No alias	histone (H3)	0.02	OrthoFinder output from all 47 species
Msp_g02325	No alias	histone H3 variant *(CENH3) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g41988	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g43931	HTR12, CENH3	histone H3 variant *(CENH3) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10158	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g20165	No alias	histone H3 variant *(CENH3) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g22036	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g008910.1.1	Solyc10g008910	histone (H3)	0.02	OrthoFinder output from all 47 species
Spa_g18210	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g33705	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g42522	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g52114	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g56118	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g45756	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014760_P001	Zm00001e014760	histone (H3)	0.02	OrthoFinder output from all 47 species
Zm00001e040856_P001	Zm00001e040856	histone (H3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048235	pollen sperm cell differentiation	IEP	Interproscan
CC	GO:0048555	generative cell nucleus	IDA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
MF	GO:0015204	urea transmembrane transporter activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
BP	GO:0015840	urea transport	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
BP	GO:0019755	one-carbon compound transport	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
MF	GO:0098599	palmitoyl hydrolase activity	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	1	133

External Links

No external refs found!

AT1G19890 (ATMGH3, MGH3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation