AT1G23490 (ATARF1, ARF1, ATARF, ATARFA1A)

Aliases : ATARF1, ARF1, ATARF, ATARFA1A

Description : ADP-ribosylation factor 1

Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G23490

Target	Alias	Description	ECC score	Gene Family Method
AT5G14670	ATARFA1B, ARFA1B	ADP-ribosylation factor A1B	0.02	OrthoFinder output from all 47 species
Ala_g31131	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12668	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.25G015600.1	ATARFA1B,...	ARF-GTPase *(ARF1) & original description:...	0.06	OrthoFinder output from all 47 species
Dde_g09806	ATARFA1F, ARFA1F	ARF-GTPase *(ARF1) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g22222	ATARF1, ARF1,...	ARF-GTPase *(ARF1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11311	ATARFA1B, ARFA1B	ARF-GTPase *(ARF1) & original description: none	0.05	OrthoFinder output from all 47 species
Pp3c4_20623V3.1	ARFA1E,...	ADP-ribosylation factor A1E	0.02	OrthoFinder output from all 47 species
Solyc01g008000.3.1	ATARFA1B,...	ARF-GTPase	0.03	OrthoFinder output from all 47 species
Solyc05g005190.3.1	ATARFA1F,...	ARF-GTPase	0.07	OrthoFinder output from all 47 species
Zm00001e009391_P001	ARF1A1C, Zm00001e009391	ARF-GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e033127_P003	ARF1A1C, Zm00001e033127	ARF-GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005525	GTP binding	ISS	Interproscan
MF	GO:0005525	GTP binding	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	IDA	Interproscan
BP	GO:0006499	N-terminal protein myristoylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
MF	GO:0016004	phospholipase activator activity	TAS	Interproscan
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0060229	lipase activator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	6	177

External Links

No external refs found!

AT1G23490 (ATARF1, ARF1, ATARF, ATARFA1A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation