AT1G26260 (CIB5)

Aliases : CIB5

Description : cryptochrome-interacting basic-helix-loop-helix 5

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G26260
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00138470	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
AMTR_s00133p00027110	BPEp, ZCW32,...	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
AT4G36930	SPT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g048981	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aev_g06746	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g21134	SPT	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01664	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Als_g06024	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Als_g12831	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Als_g48384	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g61959	PIL5, PIF1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g29567	CIB5	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aop_g14421	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene32584.t1	LRL3, Aspi01Gene32584	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0173.g055808	SPT	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g25222	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g60405	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G038900.1	LRL3, Ceric.04G038900	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.04G045500.1	Ceric.04G045500	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g20328	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g09859	SPT	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g17261	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03657	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09150	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g18802	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
GSVIVT01007389001	No alias	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
GSVIVT01022111001	SPT	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Gb_07223	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
LOC_Os01g61480.1	LOC_Os01g61480	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os03g51910.1	LOC_Os03g51910	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
LOC_Os06g47980.1	LOC_Os06g47980	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os08g42470.1	LOC_Os08g42470	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
LOC_Os09g25040.1	LRL1, LOC_Os09g25040	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Lfl_g06729	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10435000g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_28961g0020	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Mpzg01410.1	LRL3	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Msp_g26284	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g26514	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g30793	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g44899	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g45935	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pir_g50236	PIL5, PIF1	regulatory protein *(PIF) of red/far-red light...	0.03	OrthoFinder output from all 47 species
Pnu_g27016	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g33766	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c3_8460V3.1	RSL2, Pp3c3_8460	ROOT HAIR DEFECTIVE 6-LIKE 2	0.02	OrthoFinder output from all 47 species
Sam_g19135	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g093280.2.1	SPT, Solyc02g093280	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc04g005220.3.1	Solyc04g005220	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc06g072520.2.1	Solyc06g072520	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Spa_g26254	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Spa_g57226	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g11732	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003701_P003	Zm00001e003701	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Zm00001e005554_P001	Zm00001e005554	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e006917_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e009823_P002	LRL1, Zm00001e009823	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e010060_P001	Zm00001e010060	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e010138_P002	Zm00001e010138	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e011866_P002	UNE12, Zm00001e011866	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e018946_P001	Zm00001e018946	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e019392_P001	Zm00001e019392	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e021883_P001	HEC3, Zm00001e021883	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e028489_P003	Zm00001e028489	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e029147_P001	HEC3, Zm00001e029147	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e030725_P001	Zm00001e030725	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e032950_P002	UNE12, Zm00001e032950	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e041668_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048513	animal organ development	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0040019	positive regulation of embryonic development	IEP	HCCA
BP	GO:0045995	regulation of embryonic development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048479	style development	IEP	HCCA
BP	GO:0048480	stigma development	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0060771	phyllotactic patterning	IEP	HCCA
BP	GO:0060772	leaf phyllotactic patterning	IEP	HCCA
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	232	280

External Links

No external refs found!

AT1G26260 (CIB5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation