AT1G26670 (VTI12, VTI1B, ATVTI12)

Aliases : VTI12, VTI1B, ATVTI12

Description : Vesicle transport v-SNARE family protein

Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G26670
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
Len_g23602	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Lfl_g21752	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Solyc03g115760.3.1	SGR4, ZIG1,...	VTI group Qb-type SNARE protein	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	TAS	Interproscan
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005483	soluble NSF attachment protein activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005770	late endosome	TAS	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
CC	GO:0005802	trans-Golgi network	TAS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	IMP	Interproscan
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006625	protein targeting to peroxisome	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006869	lipid transport	RCA	Interproscan
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006891	intra-Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0006891	intra-Golgi vesicle-mediated transport	TAS	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010351	lithium ion transport	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015919	peroxisomal membrane transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0016197	endosomal transport	RCA	Interproscan
BP	GO:0016558	protein import into peroxisome matrix	RCA	Interproscan
BP	GO:0030001	metal ion transport	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0040007	growth	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043574	peroxisomal transport	None	Extended
BP	GO:0044743	protein transmembrane import into intracellular organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	TAS	Interproscan
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072662	protein localization to peroxisome	None	Extended
BP	GO:0072663	establishment of protein localization to peroxisome	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009269	response to desiccation	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010044	response to aluminum ion	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007705	Vesicle_trsprt_v-SNARE_N	12	91

External Links

No external refs found!

AT1G26670 (VTI12, VTI1B, ATVTI12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation