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  5. AT1G26880

AT1G26880


Description : Ribosomal protein L34e superfamily protein


Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G26880

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
AMTR_s00010p00260730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Adi_g023873 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Adi_g049423 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g101365 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g107643 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g128643 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g05903 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g19937 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species
Aob_g10035 RPL34 component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g12026 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g25898 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g25976 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g19797 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g25989 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Aspi01Gene60347.t1 Aspi01Gene60347 component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0045.g029897 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Azfi_s0094.g043410 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0225.g058934 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Ceric.29G078700.1 Ceric.29G078700 component *(eL34) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Ceric.34G068800.1 Ceric.34G068800 component *(eL34) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 OrthoFinder output from all 47 species
Dac_g02443 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Dcu_g20175 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species
Dcu_g27575 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g27998 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g28753 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dcu_g43816 RPL34 component *(eL34) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Dde_g15490 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g00547 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g19232 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g23903 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01011419001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01019985001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Gb_36060 No alias component RPL34 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os08g06040.1 LOC_Os08g06040 component RPL34 of LSU proteome component 0.41 OrthoFinder output from all 47 species
LOC_Os08g33920.1 LOC_Os08g33920 component RPL34 of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os09g24690.1 LOC_Os09g24690 component RPL34 of LSU proteome component 0.3 OrthoFinder output from all 47 species
Len_g06750 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Lfl_g26380 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g27402 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31825 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.2 OrthoFinder output from all 47 species
MA_175574g0010 No alias component RPL34 of LSU proteome component 0.18 OrthoFinder output from all 47 species
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Mp4g17040.1 No alias component RPL34 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Msp_g09133 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Msp_g33299 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g39040 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g20020 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g10506 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g27766 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g53253 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g66658 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_2940V3.1 RPL34, Pp3c11_2940 Ribosomal protein L34e superfamily protein 0.18 OrthoFinder output from all 47 species
Pp3c11_3090V3.1 RPL34, Pp3c11_3090 Ribosomal protein L34e superfamily protein 0.05 OrthoFinder output from all 47 species
Pp3c1_1800V3.1 RPL34, Pp3c1_1800 Ribosomal protein L34e superfamily protein 0.2 OrthoFinder output from all 47 species
Pp3c25_11980V3.1 Pp3c25_11980 Ribosomal protein L34e superfamily protein 0.25 OrthoFinder output from all 47 species
Pp3c2_34570V3.1 Pp3c2_34570 Ribosomal protein L34e superfamily protein 0.12 OrthoFinder output from all 47 species
Pp3c7_21380V3.1 Pp3c7_21380 Ribosomal protein L34e superfamily protein 0.17 OrthoFinder output from all 47 species
Ppi_g25958 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g58066 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05824 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g07710 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g14297 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20232 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g22792 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g23757 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g23859 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g35945 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g41835 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g44116 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g46511 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo113433 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc02g087930.3.1 Solyc02g087930 component RPL34 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Solyc05g007560.3.1 Solyc05g007560 component RPL34 of LSU proteome component 0.34 OrthoFinder output from all 47 species
Solyc06g069860.4.1 Solyc06g069860 component RPL34 of LSU proteome component 0.34 OrthoFinder output from all 47 species
Spa_g28558 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g37008 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g26519 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Tin_g41341 RPL34 component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g42576 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g42684 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e004116_P001 Zm00001e004116 component RPL34 of LSU proteome component 0.28 OrthoFinder output from all 47 species
Zm00001e021733_P002 Zm00001e021733 component RPL34 of LSU proteome component 0.27 OrthoFinder output from all 47 species
Zm00001e034114_P001 Zm00001e034114 component RPL34 of LSU proteome component 0.33 OrthoFinder output from all 47 species
Zm00001e040229_P001 Zm00001e040229 component RPL34 of LSU proteome component 0.33 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 1 96
No external refs found!