AT1G27900

Description : RNA helicase family protein

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G27900

Target	Alias	Description	ECC score	Gene Family Method
AT3G26560	No alias	ATP-dependent RNA helicase, putative	0.03	OrthoFinder output from all 47 species
Adi_g008210	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g008219	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084485	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107993	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07016	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01897	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g19131	EMB3011	RNA helicase *(Prp16) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g29988	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13922	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g15706	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g07013	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g11619	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Cba_g33796	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Cba_g35146	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.21G075900.1	EMB3011, Ceric.21G075900	RNA helicase *(Prp16) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.34G065000.1	Ceric.34G065000	not classified & original description: pacid=50623415...	0.03	OrthoFinder output from all 47 species
Dac_g44524	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g08449	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007911001	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.04	OrthoFinder output from all 47 species
GSVIVT01010362001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Gb_11931	No alias	RNA helicase (Prp22)	0.04	OrthoFinder output from all 47 species
Gb_13411	EMB3011	RNA helicase (Prp16)	0.03	OrthoFinder output from all 47 species
LOC_Os01g11370.1	LOC_Os01g11370	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os06g09280.1	LOC_Os06g09280	RNA helicase (Prp22)	0.03	OrthoFinder output from all 47 species
LOC_Os08g24760.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.04	OrthoFinder output from all 47 species
LOC_Os11g20554.1	LOC_Os11g20554	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Lfl_g05720	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g08910	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g29092	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g34333	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10217744g0010	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.04	OrthoFinder output from all 47 species
Nbi_g07572	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g19475	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Ore_g42990	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44705	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012085	No alias	not classified & original description: CDS=161-2176	0.03	OrthoFinder output from all 47 species
Sam_g03727	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06275	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14599	No alias	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16290	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48742	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Solyc09g008120.4.1	Solyc09g008120	RNA helicase (Prp22)	0.05	OrthoFinder output from all 47 species
Spa_g17882	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g01282	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g02106	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Tin_g02893	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0000723	telomere maintenance	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010332	response to gamma radiation	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0032204	regulation of telomere maintenance	RCA	Interproscan
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043247	telomere maintenance in response to DNA damage	RCA	Interproscan
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008252	nucleotidase activity	IEP	HCCA
MF	GO:0008253	5'-nucleotidase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	560	642
IPR003593	AAA+_ATPase	19	153
IPR007502	Helicase-assoc_dom	400	477
IPR001650	Helicase_C	208	335

External Links

No external refs found!

AT1G27900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation