AT1G31310

Description : hydroxyproline-rich glycoprotein family protein

Gene families : OG0000982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000982_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G31310

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00016810	evm_27.TU.AmTr_v1...	No description available	0.05	OrthoFinder output from all 47 species
Cba_g08597	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14877	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.15G070800.1	Ceric.15G070800	not classified & original description: pacid=50639661...	0.03	OrthoFinder output from all 47 species
Dac_g30823	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g05432	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13084	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01026222001	No alias	No description available	0.08	OrthoFinder output from all 47 species
LOC_Os03g46350.1	LOC_Os03g46350	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
LOC_Os04g57530.1	LOC_Os04g57530	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
MA_174370g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Ore_g44050	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16374	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo402580	No alias	Trihelix transcription factor ASR3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo73941	No alias	No description available	0.02	OrthoFinder output from all 47 species
Solyc02g030460.2.1	Solyc02g030460	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
Solyc02g069390.2.1	Solyc02g069390	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species
Tin_g15445	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e006592_P002	Zm00001e006592	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Zm00001e012318_P001	Zm00001e012318	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008810	cellulase activity	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G31310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation