AT1G31340 (RUB1, ATRUB1, NEDD8)

Aliases : RUB1, ATRUB1, NEDD8

Description : related to ubiquitin 1

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G31340
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AT3G09790	UBQ8	ubiquitin 8	0.01	OrthoFinder output from all 47 species
Aev_g05687	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g16685	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g22483	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g28226	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g45146	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g46335	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Aob_g10329	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g21615	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g71259	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene15129.t1	UBQ11, Aspi01Gene15129	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene18516.t1	UBQ11, Aspi01Gene18516	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene23135.t1	UBQ11, Aspi01Gene23135	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g43648	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77311	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.24G048500.1	UBQ11, Ceric.24G048500	UBQ ubiquitin-fold protein & original description:...	0.03	OrthoFinder output from all 47 species
Cre07.g317050	No alias	Polyubiquitin (Fragment) OS=Acetabularia peniculus	0.01	OrthoFinder output from all 47 species
Dde_g39498	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01023471001	UBQ10	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
Len_g36572	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g27408	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
MA_14427g0010	UBQ11	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
MA_9108314g0010	UBQ11	Polyubiquitin 3 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Mp4g02740.1	UBQ10	ubiquitin-fold protein (UBQ)	0.04	OrthoFinder output from all 47 species
Msp_g09233	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02100	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05460	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g27503	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Smo271198	UBQ4	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Spa_g12172	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g17745	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e034164_P001	RUB1, ATRUB1,...	ubiquitin-fold protein (RUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0045116	protein neddylation	TAS	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	HCCA
BP	GO:0000302	response to reactive oxygen species	IEP	HCCA
CC	GO:0000793	condensed chromosome	IEP	HCCA
CC	GO:0000794	condensed nuclear chromosome	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0004033	aldo-keto reductase (NADP) activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006580	ethanolamine metabolic process	IEP	HCCA
BP	GO:0006617	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009270	response to humidity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0010037	response to carbon dioxide	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
BP	GO:0010265	SCF complex assembly	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015301	obsolete anion:anion antiporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030104	water homeostasis	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034599	cellular response to oxidative stress	IEP	HCCA
BP	GO:0034614	cellular response to reactive oxygen species	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042439	ethanolamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0046685	response to arsenic-containing substance	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0048871	multicellular organismal homeostasis	IEP	HCCA
BP	GO:0050878	regulation of body fluid levels	IEP	HCCA
BP	GO:0050891	multicellular organismal water homeostasis	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
MF	GO:0052638	indole-3-butyrate beta-glucosyltransferase activity	IEP	HCCA
BP	GO:0062197	cellular response to chemical stress	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0070301	cellular response to hydrogen peroxide	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071470	cellular response to osmotic stress	IEP	HCCA
BP	GO:0071472	cellular response to salt stress	IEP	HCCA
BP	GO:0071474	cellular hyperosmotic response	IEP	HCCA
BP	GO:0071475	cellular hyperosmotic salinity response	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0080024	indolebutyric acid metabolic process	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0090332	stomatal closure	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
BP	GO:1901160	primary amino compound metabolic process	IEP	HCCA
BP	GO:1902456	regulation of stomatal opening	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	79	150
IPR000626	Ubiquitin-like_dom	3	74

External Links

No external refs found!

AT1G31340 (RUB1, ATRUB1, NEDD8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation