AT1G47720 (OSB1)

Aliases : OSB1

Description : Primosome PriB/single-strand DNA-binding

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G47720
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AT2G33760	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	OrthoFinder output from all 47 species
AT3G05240	MEF19	mitochondrial editing factor 19	0.03	OrthoFinder output from all 47 species
AT3G15930	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G28660	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G62890	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G14820	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G15720	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT4G31070	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	OrthoFinder output from all 47 species
AT4G37170	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	OrthoFinder output from all 47 species
AT4G39530	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G52850	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g018129	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g087178	REME1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07273	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18225	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28165	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05785	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06689	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g06882	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07484	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08654	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g24105	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33642	No alias	ssDNA-binding protein *(OSB) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g26997	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27000	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27604	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g28228	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene66052.t1	Aspi01Gene66052	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011663	No alias	not classified & original description: CDS=1-3036	0.03	OrthoFinder output from all 47 species
Azfi_s0045.g030112	No alias	not classified & original description: CDS=94-318	0.02	OrthoFinder output from all 47 species
Azfi_s0049.g030697	No alias	not classified & original description: CDS=1-2361	0.02	OrthoFinder output from all 47 species
Azfi_s0117.g046573	No alias	not classified & original description: CDS=1-1419	0.02	OrthoFinder output from all 47 species
Azfi_s0134.g049386	No alias	not classified & original description: CDS=1-2409	0.03	OrthoFinder output from all 47 species
Azfi_s0583.g078513	No alias	not classified & original description: CDS=1-2793	0.03	OrthoFinder output from all 47 species
Azfi_s0601.g078901	No alias	not classified & original description: CDS=1-2334	0.03	OrthoFinder output from all 47 species
Cba_g04634	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g05269	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g07472	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g26042	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g31307	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g35114	CRR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g37893	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g75337	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cre12.g483700	OSB4	Cell cycle.organelle machineries.DNA...	0.01	OrthoFinder output from all 47 species
Dac_g04499	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g35086	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g35222	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g35959	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g05661	DOT4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08951	CRR22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g17291	CRR22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g23389	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12128	No alias	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16748	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g05368	CRR22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g18069	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g18487	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g18578	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g25458	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g26306	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06706	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g15749	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g38041	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g40188	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g24471	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g26512	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g31269	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g40949	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g15027	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g41973	OSB4	cofactor of plastid-encoded RNA polymerase *(TAC9) &...	0.02	OrthoFinder output from all 47 species
Pir_g63292	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g03628	REME1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g06477	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14835	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g53728	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g55456	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g56908	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003604	No alias	not classified & original description: CDS=1-2277	0.03	OrthoFinder output from all 47 species
Sam_g03383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g12399	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29238	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g115790.1.1	CRR28, Solyc03g115790	Pentatricopeptide repeat-containing protein At5g66520...	0.03	OrthoFinder output from all 47 species
Solyc04g082870.1.1	Solyc04g082870	Pentatricopeptide repeat-containing protein At1g25360...	0.03	OrthoFinder output from all 47 species
Solyc10g080220.2.1	Solyc10g080220	Putative pentatricopeptide repeat-containing protein...	0.03	OrthoFinder output from all 47 species
Solyc12g099620.1.1	Solyc12g099620	Pentatricopeptide repeat-containing protein At4g32430,...	0.03	OrthoFinder output from all 47 species
Spa_g09360	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g11331	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g44822	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10295	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g23008	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IMP	Interproscan
BP	GO:0000018	regulation of DNA recombination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045910	negative regulation of DNA recombination	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G47720 (OSB1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation