AT1G53160 (SPL4)

Aliases : SPL4

Description : squamosa promoter binding protein-like 4

Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G53160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00106p00142740	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT1G69170	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.04	OrthoFinder output from all 47 species
Adi_g104940	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27599	AtSPL9, SPL9	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s1185.g099051	No alias	not classified & original description: CDS=1-531	0.03	OrthoFinder output from all 47 species
Ceric.07G099600.1	SPL13, SPL13A,...	SBP-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.12G034000.1	SPL13, SPL13A,...	SBP-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Cre02.g085150	SPL4	RNA biosynthesis.transcriptional activation.SBP...	0.01	OrthoFinder output from all 47 species
Cre07.g345050	SPL3	RNA biosynthesis.transcriptional activation.SBP...	0.01	OrthoFinder output from all 47 species
Dac_g16262	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g48516	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04651	SPL3	SBP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05026	SPL8	SBP-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01012247001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.04	OrthoFinder output from all 47 species
GSVIVT01018204001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.05	OrthoFinder output from all 47 species
Gb_38013	SPL2	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Gb_38014	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os04g46580.1	SPL3, LOC_Os04g46580	transcription factor (SBP)	0.02	OrthoFinder output from all 47 species
LOC_Os06g44860.1	SPL8, LOC_Os06g44860	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
LOC_Os08g39890.1	AtSPL9, SPL9,...	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
LOC_Os09g31438.1	AtSPL9, SPL9,...	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
MA_10428252g0010	SPL8	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_10429891g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_15381g0010	SPL10	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Msp_g12140	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g08781	SPL7, ATSPL7	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37276	SPL10	SBP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g090730.3.1	SPL8, Solyc01g090730	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Solyc07g062980.4.1	SPL3, Solyc07g062980	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Spa_g13068	AtSPL9, SPL9	SBP-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e006686_P001	SPL8, Zm00001e006686	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Zm00001e013761_P001	SPL2, Zm00001e013761	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Zm00001e013795_P002	SPL8, Zm00001e013795	transcription factor (SBP)	0.09	OrthoFinder output from all 47 species
Zm00001e021962_P003	SPL13, SPL13A,...	transcription factor (SBP)	0.05	OrthoFinder output from all 47 species
Zm00001e025110_P001	SPL8, Zm00001e025110	transcription factor (SBP)	0.06	OrthoFinder output from all 47 species
Zm00001e034537_P001	AtSPL9, SPL9,...	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Zm00001e041526_P001	SPL3, Zm00001e041526	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010321	regulation of vegetative phase change	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010158	abaxial cell fate specification	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	54	127

External Links

No external refs found!

AT1G53160 (SPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation