AT1G54320

Description : LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein

Gene families : OG0001694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001694_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G54320

Target	Alias	Description	ECC score	Gene Family Method
Adi_g044335	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.02	OrthoFinder output from all 47 species
Adi_g078380	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.02	OrthoFinder output from all 47 species
Aop_g17395	ALIS5	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Aop_g20154	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.02	OrthoFinder output from all 47 species
Azfi_s0005.g009144	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Azfi_s0028.g024010	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.02	OrthoFinder output from all 47 species
Ceric.15G020400.1	Ceric.15G020400	regulatory component *(ALIS) of phospholipid flippase...	0.04	OrthoFinder output from all 47 species
Ehy_g18789	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
GSVIVT01036722001	No alias	Solute transport.primary active transport.P-type ATPase...	0.03	OrthoFinder output from all 47 species
LOC_Os02g07750.1	ALIS1, LOC_Os02g07750	regulatory component ALIS of ALA-ALIS flippase complex....	0.04	OrthoFinder output from all 47 species
Len_g23166	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Len_g42817	No alias	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Msp_g11556	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Pir_g10728	ALIS1	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Sam_g06859	No alias	regulatory component *(ALIS) of phospholipid flippase...	0.03	OrthoFinder output from all 47 species
Zm00001e013756_P002	Zm00001e013756	regulatory component ALIS of ALA-ALIS flippase complex....	0.03	OrthoFinder output from all 47 species
Zm00001e025134_P002	Zm00001e025134	regulatory component ALIS of ALA-ALIS flippase complex....	0.04	OrthoFinder output from all 47 species
Zm00001e032178_P002	ALIS1, Zm00001e032178	regulatory component ALIS of ALA-ALIS flippase complex....	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006858	extracellular transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007584	response to nutrient	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
BP	GO:0042631	cellular response to water deprivation	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071462	cellular response to water stimulus	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005045	CDC50/LEM3_fam	69	333

External Links

No external refs found!

AT1G54320

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation