AT1G56170 (NF-YC2, ATHAP5B, HAP5B)

Aliases : NF-YC2, ATHAP5B, HAP5B

Description : nuclear factor Y, subunit C2

Gene families : OG0001038 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001038_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00257290	NF-YC3,...	RNA biosynthesis.transcriptional activation.NF-Y...	0.06	OrthoFinder output from all 47 species
AT5G50480	NF-YC6	nuclear factor Y, subunit C6	0.03	OrthoFinder output from all 47 species
Aev_g06001	HAP5A, NF-YC1, ATHAP5A	component *(NF-YC) of NF-Y transcription factor complex...	0.02	OrthoFinder output from all 47 species
Aev_g06656	HAP5A, NF-YC1, ATHAP5A	component *(NF-YC) of NF-Y transcription factor complex...	0.02	OrthoFinder output from all 47 species
Aspi01Gene23954.t1	NF-YC2, ATHAP5B,...	component *(NF-YC) of NF-Y transcription factor complex...	0.05	OrthoFinder output from all 47 species
Aspi01Gene61987.t1	HAP5A, NF-YC1,...	component *(NF-YC) of NF-Y transcription factor complex...	0.04	OrthoFinder output from all 47 species
GSVIVT01030963001	HAP5A, NF-YC1, ATHAP5A	Nuclear transcription factor Y subunit C-4...	0.09	OrthoFinder output from all 47 species
GSVIVT01036760001	NF-YC2, ATHAP5B, HAP5B	Nuclear transcription factor Y subunit C-2...	0.02	OrthoFinder output from all 47 species
Gb_00256	HAP5A, NF-YC1, ATHAP5A	component NF-YC of NF-Y transcription factor complex	0.04	OrthoFinder output from all 47 species
Gb_13087	NF-YC2, ATHAP5B, HAP5B	component NF-YC of NF-Y transcription factor complex	0.03	OrthoFinder output from all 47 species
LOC_Os04g58680.1	NF-YC2, ATHAP5B,...	component NF-YC of NF-Y transcription factor complex	0.04	OrthoFinder output from all 47 species
MA_10163039g0010	HAP5A, NF-YC1, ATHAP5A	component NF-YC of NF-Y transcription factor complex	0.03	OrthoFinder output from all 47 species
MA_11029g0010	NF-YC2, ATHAP5B, HAP5B	component NF-YC of NF-Y transcription factor complex	0.04	OrthoFinder output from all 47 species
MA_8756989g0010	NF-YC2, ATHAP5B, HAP5B	component NF-YC of NF-Y transcription factor complex	0.01	OrthoFinder output from all 47 species
Solyc03g111450.3.1	HAP5A, NF-YC1,...	component NF-YC of NF-Y transcription factor complex	0.08	OrthoFinder output from all 47 species
Spa_g47083	HAP5A, NF-YC1, ATHAP5A	component *(NF-YC) of NF-Y transcription factor complex...	0.04	OrthoFinder output from all 47 species
Zm00001e010042_P001	NF-YC2, ATHAP5B,...	component NF-YC of NF-Y transcription factor complex	0.03	OrthoFinder output from all 47 species
Zm00001e024345_P001	NF-YC3, Zm00001e024345	component NF-YC of NF-Y transcription factor complex	0.03	OrthoFinder output from all 47 species
Zm00001e034481_P001	NF-YC3, Zm00001e034481	component NF-YC of NF-Y transcription factor complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
CC	GO:0016602	CCAAT-binding factor complex	ISS	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008115	sarcosine oxidase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009686	gibberellin biosynthetic process	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
BP	GO:0016102	diterpenoid biosynthetic process	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016647	oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
CC	GO:0031012	extracellular matrix	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	HCCA
MF	GO:0052691	UDP-arabinopyranose mutase activity	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003958	CBFA_NFYB_domain	76	139

External Links

No external refs found!

AT1G56170 (NF-YC2, ATHAP5B, HAP5B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation