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  5. AT1G60400

AT1G60400


Description : F-box/RNI-like superfamily protein


Gene families : OG0007014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G60400
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 OrthoFinder output from all 47 species
AT1G60410 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT1G66640 No alias RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G78750 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G80470 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G22600 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 OrthoFinder output from all 47 species
AT5G22670 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 OrthoFinder output from all 47 species
AT5G22680 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 OrthoFinder output from all 47 species
AT5G22720 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G27750 No alias F-box/FBD-like domains containing protein 0.04 OrthoFinder output from all 47 species
AT5G44940 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 OrthoFinder output from all 47 species
AT5G44960 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.06 OrthoFinder output from all 47 species
AT5G44980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 OrthoFinder output from all 47 species
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 OrthoFinder output from all 47 species
AT5G53840 No alias F-box/RNI-like/FBD-like domains-containing protein 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 16 52
IPR013101 Leu-rich_rpt_2 166 189
No external refs found!