AT1G64400 (LACS3)

Aliases : LACS3

Description : AMP-dependent synthetase and ligase family protein

Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G64400

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008529	LACS6, ATLACS6	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Als_g06635	ATLACS7, LACS7	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g11452	LACS6, ATLACS6	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z191000.1	LACS4, Ceric.1Z191000	not classified & original description: pacid=50613630...	0.03	OrthoFinder output from all 47 species
GSVIVT01017932001	LACS6, ATLACS6	Lipid metabolism.lipid degradation.fatty acid...	0.05	OrthoFinder output from all 47 species
Gb_32132	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os01g48910.2	LACS4, LOC_Os01g48910	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_10432761g0010	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10435049g0010	LACS6, ATLACS6	Long chain acyl-CoA synthetase 7, peroxisomal...	0.04	OrthoFinder output from all 47 species
MA_652419g0010	LACS6, ATLACS6	Long chain acyl-CoA synthetase 7, peroxisomal...	0.04	OrthoFinder output from all 47 species
MA_839621g0010	No alias	Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Solyc01g099100.4.1	LACS6, ATLACS6,...	peroxisomal long-chain acyl-CoA synthetase	0.02	OrthoFinder output from all 47 species
Solyc08g082280.4.1	LACS4, Solyc08g082280	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Zm00001e036457_P004	LACS4, Zm00001e036457	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001676	long-chain fatty acid metabolic process	IDA	Interproscan
BP	GO:0001676	long-chain fatty acid metabolic process	RCA	Interproscan
BP	GO:0002213	defense response to insect	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	TAS	Interproscan
BP	GO:0006633	fatty acid biosynthetic process	RCA	Interproscan
BP	GO:0006633	fatty acid biosynthetic process	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015645	fatty acid ligase activity	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000873	AMP-dep_Synth/Lig_com	57	525

External Links

No external refs found!

AT1G64400 (LACS3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation