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  5. AT1G64510

AT1G64510


Description : Translation elongation factor EF1B/ribosomal protein S6 family protein


Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G64510
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00220150 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Adi_g019564 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aev_g04389 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g02976 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g05365 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g19098 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g08781 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g30964 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Azfi_s0051.g031290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Cba_g09290 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g26011 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.10G083400.1 Ceric.10G083400 component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.32G022300.1 Ceric.32G022300 component *(uS6c) of small plastid ribosomal-subunit... 0.32 OrthoFinder output from all 47 species
Cre12.g520600 No alias Protein biosynthesis.organelle translation... 0.19 OrthoFinder output from all 47 species
Dac_g02644 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g40728 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Dde_g06910 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g04427 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01019593001 No alias Protein biosynthesis.organelle translation... 0.28 OrthoFinder output from all 47 species
Gb_07402 No alias component psRPS6 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Gb_07403 No alias component psRPS6 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
LOC_Os03g62630.1 LOC_Os03g62630 component psRPS6 of small ribosomal subunit proteome 0.26 OrthoFinder output from all 47 species
Len_g38836 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Lfl_g06876 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
MA_10429326g0010 No alias component psRPS6 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.32 OrthoFinder output from all 47 species
Msp_g00928 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g25871 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g08524 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ore_g16705 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Pnu_g10315 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ppi_g00580 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ppi_g06171 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Sam_g19470 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Smo58368 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Solyc08g082690.2.1 Solyc08g082690 component psRPS6 of small ribosomal subunit proteome 0.24 OrthoFinder output from all 47 species
Spa_g37875 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Tin_g06363 No alias component *(uS6c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000313 organellar ribosome IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
CC GO:0009547 plastid ribosome IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
BP GO:0032544 plastid translation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090391 granum assembly IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 102 200
No external refs found!