AT1G65060 (4CL3)

Aliases : 4CL3

Description : 4-coumarate:CoA ligase 3

Gene families : OG0000673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000673_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G65060
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00217510	ACOS5,...	4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00025p00217630	ACOS5,...	4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00048p00101790	4CL3,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.04	OrthoFinder output from all 47 species
Adi_g103472	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Adi_g115638	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Als_g32388	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Aob_g06612	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene11403.t1	AT4CL2, 4CL2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene16478.t1	ACOS5, Aspi01Gene16478	acyl-CoA synthetase *(ACS5) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene53545.t1	4CL3, Aspi01Gene53545	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0013.g013344	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.06	OrthoFinder output from all 47 species
Azfi_s0027.g023677	ACOS5	not classified & original description: CDS=1-1590	0.03	OrthoFinder output from all 47 species
Azfi_s0030.g024259	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0114.g046013	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.06	OrthoFinder output from all 47 species
Cba_g03267	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Ceric.12G038600.1	4CL3, Ceric.12G038600	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.17G083800.1	AT4CL2, 4CL2,...	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Ceric.33G041000.1	ACOS5, Ceric.33G041000	acyl-CoA synthetase *(ACS5) & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g17383	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g24331	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Dde_g31145	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01024400001	4CL3	4-coumarate--CoA ligase 2 OS=Glycine max	0.09	OrthoFinder output from all 47 species
GSVIVT01029182001	4CL1, AT4CL1, 4CL.1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.07	OrthoFinder output from all 47 species
GSVIVT01029183001	AT4CL2, 4CL2	4-coumarate--CoA ligase 1 OS=Nicotiana tabacum	0.02	OrthoFinder output from all 47 species
Gb_41091	4CL3	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.09	OrthoFinder output from all 47 species
LOC_Os02g46970.1	4CL3, LOC_Os02g46970	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.08	OrthoFinder output from all 47 species
LOC_Os04g24530.1	ACOS5, LOC_Os04g24530	acyl-CoA synthetase (ACS5)	0.02	OrthoFinder output from all 47 species
MA_109119g0010	4CL3	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.05	OrthoFinder output from all 47 species
MA_8946476g0010	ACOS5	acyl-CoA synthetase (ACS5)	0.05	OrthoFinder output from all 47 species
Mp5g01200.1	4CL1, AT4CL1, 4CL.1	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.02	OrthoFinder output from all 47 species
Msp_g00641	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Msp_g40313	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42310	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g08794	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Pp3c8_730V3.1	ACOS5, Pp3c8_730	acyl-CoA synthetase 5	0.03	OrthoFinder output from all 47 species
Ppi_g08302	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g51306	No alias	acyl-CoA synthetase *(ACS5) & original description: none	0.02	OrthoFinder output from all 47 species
Smo177393	AT4CL2, 4CL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
Solyc02g088710.3.1	ACOS5, Solyc02g088710	acyl-CoA synthetase (ACS5)	0.03	OrthoFinder output from all 47 species
Solyc03g097030.3.1	4CL3, Solyc03g097030	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.11	OrthoFinder output from all 47 species
Solyc06g068650.4.1	AT4CL2, 4CL2,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
Solyc07g008360.2.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.06	OrthoFinder output from all 47 species
Spa_g07084	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Spa_g22789	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Spa_g47039	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07442	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Tin_g11239	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e008138_P001	ACOS5, Zm00001e008138	acyl-CoA synthetase (ACS5)	0.04	OrthoFinder output from all 47 species
Zm00001e013798_P002	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.02	OrthoFinder output from all 47 species
Zm00001e016374_P001	ACOS5, Zm00001e016374	acyl-CoA synthetase (ACS5)	0.02	OrthoFinder output from all 47 species
Zm00001e022313_P002	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
Zm00001e023286_P002	4CL3, Zm00001e023286	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.09	OrthoFinder output from all 47 species
Zm00001e037698_P001	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	IEP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	TAS	Interproscan
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010208	pollen wall assembly	None	Extended
BP	GO:0010224	response to UV-B	RCA	Interproscan
BP	GO:0010584	pollen exine formation	IMP	Interproscan
BP	GO:0010927	cellular component assembly involved in morphogenesis	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016207	4-coumarate-CoA ligase activity	IDA	Interproscan
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004126	cytidine deaminase activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	HCCA
BP	GO:0006216	cytidine catabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0009119	ribonucleoside metabolic process	IEP	HCCA
BP	GO:0009164	nucleoside catabolic process	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009714	chalcone metabolic process	IEP	HCCA
BP	GO:0009715	chalcone biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009972	cytidine deamination	IEP	HCCA
BP	GO:0010253	UDP-rhamnose biosynthetic process	IEP	HCCA
MF	GO:0010280	UDP-L-rhamnose synthase activity	IEP	HCCA
BP	GO:0010315	auxin export across the plasma membrane	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
MF	GO:0016210	naringenin-chalcone synthase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016872	intramolecular lyase activity	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031312	extrinsic component of organelle membrane	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0033478	UDP-rhamnose metabolic process	IEP	HCCA
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
CC	GO:0042406	extrinsic component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0042454	ribonucleoside catabolic process	IEP	HCCA
MF	GO:0045430	chalcone isomerase activity	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
MF	GO:0045486	naringenin 3-dioxygenase activity	IEP	HCCA
BP	GO:0046087	cytidine metabolic process	IEP	HCCA
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	HCCA
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0047213	anthocyanidin 3-O-glucosyltransferase activity	IEP	HCCA
MF	GO:0050284	sinapate 1-glucosyltransferase activity	IEP	HCCA
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051552	flavone metabolic process	IEP	HCCA
BP	GO:0051553	flavone biosynthetic process	IEP	HCCA
BP	GO:0051554	flavonol metabolic process	IEP	HCCA
BP	GO:0051555	flavonol biosynthetic process	IEP	HCCA
MF	GO:0052636	arabinosyltransferase activity	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	HCCA
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	HCCA
MF	GO:0080059	flavonol 3-O-arabinosyltransferase activity	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901658	glycosyl compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000873	AMP-dep_Synth/Lig_com	62	466
IPR025110	AMP-bd_C	475	550

External Links

No external refs found!

AT1G65060 (4CL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation